Alpha R2, AGA only working as USB hub

My computer is an Alienware alpha R2, with a gtx 960 and I have a 1060 in my AGA which I would like to be using, however, nothing seems to recognize my AGA. Alienware command center does not let me change the color of it, and in device manager, I cannot see any graphics cards there. However, if I plug my mouse or keyboard into it, they work perfectly fine. I have tried reinstalling most of the software, the AGA software, the alienware command center software, and have installed all current updates that this https://www.dell.com/support/home/en-us/product-support/product/alienware-steam-r2-console/overview page tells me to install, however it does seem to have three conflicting bios updates, and I have tried with all three to no avail. I am currently on the latest bios update that has been released. I have also reseated my graphics card, and cleaned out my AGA and alpha R2 so there is no dust.